polyase

• Polyase API
  • Submodules
  • polyase.allele_utils module
    • AlleleRatioCalculator
      • AlleleRatioCalculator.calculate_multiple_ratios()
      • AlleleRatioCalculator.calculate_ratios()
      • AlleleRatioCalculator.get_ratios_for_synt_id()
      • AlleleRatioCalculator.set_data()
    • calculate_allelic_ratios()
  • polyase.ase_data_loader module
    • aggregate_transcripts_to_genes()
    • load_ase_data()
  • polyase.filter module
    • AnnData Filtering Module
    • filter_low_expressed_genes()
  • polyase.multimapping module
    • MultimappingRatioCalculator
      • MultimappingRatioCalculator.calculate_ratios()
      • MultimappingRatioCalculator.get_ratios_for_synt_id()
      • MultimappingRatioCalculator.set_data()
    • calculate_multi_ratios()
    • calculate_per_allele_ratios()
  • polyase.plotting module
    • convert_pvalue_to_asterisks()
    • plot_allele_specific_isoform_structure()
    • plot_allelic_ratios()
    • plot_differential_isoform_usage()
    • plot_top_differential_isoforms()
    • plot_top_differential_syntelogs()
    • plot_top_differential_syntelogs_annotated()
  • polyase.stats module
    • stats.py
    • get_top_differential_syntelogs()
    • test_allelic_ratios_between_conditions()
    • test_allelic_ratios_pairwise()
    • test_allelic_ratios_within_conditions()
    • test_differential_isoform_structure()
    • test_isoform_DIU_between_conditions()
    • test_pairwise_allele_response_between_conditions()
  • polyase.structure module
    • add_exon_structure()
    • add_structure_from_gtf()
    • calculate_combined_structure_similarity()
    • calculate_structure_similarity()
  • Module contents
    • AlleleRatioCalculator
      • AlleleRatioCalculator.calculate_multiple_ratios()
      • AlleleRatioCalculator.calculate_ratios()
      • AlleleRatioCalculator.get_ratios_for_synt_id()
      • AlleleRatioCalculator.set_data()
    • MultimappingRatioCalculator
      • MultimappingRatioCalculator.calculate_ratios()
      • MultimappingRatioCalculator.get_ratios_for_synt_id()
      • MultimappingRatioCalculator.set_data()
    • add_exon_structure()
    • add_structure_from_gtf()
    • aggregate_transcripts_to_genes()
    • calculate_allelic_ratios()
    • calculate_multi_ratios()
    • calculate_per_allele_ratios()
    • filter_low_expressed_genes()
    • get_top_differential_syntelogs()
    • load_ase_data()
    • plot_allele_specific_isoform_structure()
    • plot_allelic_ratios()
    • plot_differential_isoform_usage()
    • plot_top_differential_isoforms()
    • plot_top_differential_syntelogs()
    • plot_top_differential_syntelogs_annotated()
    • test_allelic_ratios_between_conditions()
    • test_allelic_ratios_pairwise()
    • test_allelic_ratios_within_conditions()
    • test_differential_isoform_structure()
    • test_isoform_DIU_between_conditions()
    • test_pairwise_allele_response_between_conditions()